a summary of current resources on Yale’s HPC clusters (not incl. 100 Tb loan)
Compute
| Grace | ||
| GROUP | NODES | CORES |
| gerstein1tb | 1 | 32 |
| gerstein | 32 | 640 |
| Farnam | ||
| GROUP | NODES | CORES |
| gerstein | 34 | 384 |
| gerstein_gpu | 3 | 60 |
Storage
| Grace | |
| GROUP | TB |
| gerstein | 400 |
| Farnam | |
| GROUP | TB |
| gerstein | 366 |
The absolute path is "/ysm-gpfs/pi/gerstein/". Please put most of your data here.
After creating the folder (don’t forget to set up chmod the way you like), then you can create a soft link your folder back to your home folder for quick access.
ln -s [your folder under pi] [the soft link under your home folder (aka ~/xx )]
1) It is possible to set up ssh such that you only have to authenticate once; subsequent ssh’s reuse that connection. Please see our detailed instructions here:
http://research.computing.yale.edu/support/hpc/user-guide/ssh-sample-configuration
2) We have detailed instructions on how to use Cyberduck and Winscp to connect using duo on our website. Please see:
http://research.computing.yale.edu/support/hpc/user-guide/transfer-files-or-cluster
I believe it is also possible to use filezilla after doing a similar configuration to avoid the creation of new connections, but don’t see the need, given that cyberduck and winscp are both usable.