Hi all,
I will be presenting the following paper in journal club tomorrow on "Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq":
https://www.nature.com/articles/nbt.3445
Trust me. It will be worth missing your post-lunch siesta for this.
Best wishes,
Prashant.
3D clusters of somatic mutations…reveal numerous rare mutations as functional targets
https://GenomeMedicine.BiomedCentral.com/articles/10.1186/s13073-016-0393-x Introduces 3DHotSpots, which is one of a number of recent approaches (incl. CLUMPS, Hotspot3D, Mutation3D & HotMAPS) for finding groupings of somatic SNVs via structure
Repost, using ((( for left angle brace
and ))) for right angle brace
Also, use send an email to post AT gersteinlab DOT org
(need to send to post, in addition to all).
Use plain text formatting – including for the URLs.
with the following tags & subjects for relevant jclub & article posts
1) Journal clubs
subject: Journal Club by MG on “Methylation from Environmental Toxins Causes DNA Knots & Protein Coils,” Nurture
((( tags scilit,jclub,MG,fromjclub )))
2) general article & news posts
((( tags scilit ))) for scientific literature
((( tags scinews ))) for scientific news
Also, use send an email to post AT gersteinlab DOT org
(need to send to post, in addition to all).
Use plain text formatting – including for the URLs.
with the following tags & subjects for relevant jclub & article posts
1) Journal clubs
subject: Journal Club by MG on “Methylation from Environmental Toxins Causes DNA Knots & Protein Coils,” Nurture
2) general article & news posts
for scientific literature
for scientific news
Hi all,
In this week’s jclub, I will discuss the two papers:
http://www.cell.com/cell/fulltext/S0092-8674(17)31120-0
http://www.cell.com/cell/fulltext/S0092-8674(17)31317-X
Thanks!
Chengfei Yan
Batch Cloud Data Transfer for @AWScloud
https://AWS.amazon.com/snowball & https://AWS.amazon.com/snowmobile Snail mail trumps email for really large data. Interesting to calculate effective transfer rates as compared “Ethernet.” Surprised that I couldn’t find even crude estimates.
Zhou, J. and Troyanskaya, O.G. (2015). Predicting effects of noncoding variants with deep learning–based sequence model. Nature Methods, 12, 931–934.
Predicting (& prioritizing) effects of noncoding variants w. [DeepSEA] #DeepLearning…model
https://www.Nature.com/nmeth/journal/v12/n10/full/nmeth.3547.html Trained w #ENCODE data